/*
 * Copyright 2014 Davy Maddelein.
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package com.compomics.pepshell.model;

/**
 *
 * @author Davy Maddelein
 */
public class QuantedPeptideGroup extends PeptideGroup {

    private Integer ratio;
    private int timesHeavyFound = 0;
    private int timesLightFound = 0;
    private ProjectInfo projectInfo;

    public QuantedPeptideGroup(Peptide aPeptide) {
        super(aPeptide);
    }

    public int getRatio() {
        if (ratio == null) {

        }
        return ratio;
    }

    public double getLogRatio() {
        return Math.log(getRatio());
    }

    public int getTimesHeavyFound() {
        return timesHeavyFound;
    }

    public void setTimesHeavyFound(int timesHeavyFound) {
        this.timesHeavyFound = timesHeavyFound;
    }

    public int getTimesLightFound() {
        return timesLightFound;
    }

    public void setTimesLightFound(int timesLightFound) {
        this.timesLightFound = timesLightFound;
    }

    public void incrementTimesHeavyFound() {
        timesHeavyFound++;
    }

    public void incrementTimesLightFound() {
        timesLightFound++;
    }

    public ProjectInfo getProjectInfo() {
        return this.projectInfo;
    }

}
